6UEO	Dna Binding Protein Dna	date	Sep 22, 2019
title	Structure Of A. Thaliana Tbp-Ac Mismatch Dna Site
authors	M.A.Schumacher
compound		source
Molecule: Tata-Box-Binding Protein 1 Chain: A, D, G, J Synonym: Attbp1,Tata Sequence-Binding Protein 1,Tbp-1,Tata- Factor 1,Tata-Box Factor 1,Transcription Initiation Factor Subunit; Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Mouse-Ear Cress Organism_taxid: 3702 Gene: Tbp1, At3g13445, Mrp15.10 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'-D(Gpcptpaptpapapapapgpgpgpcp Chain: B, E, H, K Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'-D(Tpgpcpcpcpcptptptpaptpapgp Chain: C, F, I, L Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 1	R_factor 0.214 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 42.242 55.512 146.340 89.97 90.03 90.14
method	X-Ray Diffraction	resolution	2.00 Å
Gene Ontology	Chain Function Process Component A, J, D, G obsolete general RNA polymer...
Primary reference	DNA mismatches reveal conformational penalties in protein-DNA recognition., Afek A, Shi H, Rangadurai A, Sahay H, Senitzki A, Xhani S, Fang M, Salinas R, Mielko Z, Pufall MA, Poon GMK, Haran TE, Schumacher MA, Al-Hashimi HM, Gordan R, Nature. 2020 Nov;587(7833):291-296. doi: 10.1038/s41586-020-2843-2. Epub 2020 Oct, 21. PMID:33087930

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (338 Kb) [Save to disk] Biological Unit Coordinates (6ueo.pdb1.gz) 84 Kb Biological Unit Coordinates (6ueo.pdb2.gz) 85 Kb Biological Unit Coordinates (6ueo.pdb3.gz) 85 Kb Biological Unit Coordinates (6ueo.pdb4.gz) 85 Kb CSU: Contacts of Structural Units for 6UEO Structure Factors (2174 Kb) Retrieve 6UEO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6UEO from S2C, [Save to disk]

View 6UEO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6UEO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6ueo_L] [6ueo_E] [6ueo_B] [6ueo_D] [6ueo_F] [6ueo_G] [6ueo_J] [6ueo_C] [6ueo_I] [6ueo_H] [6ueo_A] [6ueo_K] SWISS-PROT database: Domain organization of by SWISSPFAM

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