6UEU Replication date Sep 23, 2019
title Crystal Structure Of Bf Dna Polymerase F710y Mutant Bound To Tetrahydrofuran And Datp
authors E.Y.Wu, L.S.Beese
compound source
Molecule: Dna Polymerase I
Chain: A, D
Ec: 2.7.7.7
Engineered: Yes
Mutation: Yes
Organism_scientific: Geobacillus Stearothermophilus
Organism_taxid: 1422
Gene: Dpo1, Pola
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: Dna (5'-D(Cpgpaptpcpapcpgp(2dt))-3')
Chain: B, E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Cpgp(3dr)Papcpgptpgpaptpcpg
Chain: C, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.200 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.875 109.068 150.096 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 2DT, 3DR, DTP, FRU, GLC, MPD, SO4 enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D
  • DNA-directed DNA polymerase ...
  • 3'-5' exonuclease activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (231 Kb) [Save to disk]
  • Biological Unit Coordinates (6ueu.pdb1.gz) 110 Kb
  • Biological Unit Coordinates (6ueu.pdb2.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 6UEU
  • CSU: Contacts of Structural Units for 6UEU
  • Structure Factors (2896 Kb)
  • Retrieve 6UEU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6UEU from S2C, [Save to disk]
  • View 6UEU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6UEU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ueu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ueu_B] [6ueu_D] [6ueu_A] [6ueu_C] [6ueu_F] [6ueu_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6UEU
  • Community annotation for 6UEU at PDBWiki (http://pdbwiki.org)

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