6UIN Dna Binding Protein Dna date Oct 01, 2019
title Role Of Beta-Hairpin Motifs In The Dna Duplex Opening By The Nucleotide Excision Repair Complex
authors D.Paul, J.H.Min
compound source
Molecule: Dna Repair Protein Rad4
Chain: A
Fragment: Unp Residues 101-632
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rad4, Yer162c
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Uv Excision Repair Protein Rad23
Chain: X
Fragment: Unp Residues 230-398
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rad23, Yel037c, Sygp-Orf29
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Dna (5'-D(Tptpgpapcptpcp(G47) Papcpaptpcpcpcpcpcpcpcptpapcpapa)-3');
Chain: W
Engineered: Yes
Synthetic: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna (5'- D(Aptptpgptpapgpnpnpnpnpgpgpaptpgptpcpgp Cpa)-3');
Chain: Y
Engineered: Yes
Synthetic: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
symmetry Space Group: P 65
R_factor 0.209 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.665 77.665 264.054 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.35 Å
ligand G47 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]
  • Biological Unit Coordinates (6uin.pdb1.gz) 195 Kb
  • LPC: Ligand-Protein Contacts for 6UIN
  • CSU: Contacts of Structural Units for 6UIN
  • Structure Factors (80 Kb)
  • Retrieve 6UIN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6UIN from S2C, [Save to disk]
    • View 6UIN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6UIN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6uin_W] [6uin_X] [6uin_A] [6uin_Y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6UIN
  • Community annotation for 6UIN at PDBWiki (http://pdbwiki.org)

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