6UJ9 Immune System date Oct 02, 2019
title Crystal Structure Of Hla-B07:02 With R140q Mutant Idh2 Pept Complex With Fab
authors M.S.Miller, P.Thirawatananond, T.Y.Aytenfisu, K.Wright, S.B.Gabe
compound source
Molecule: Hla Class I Histocompatibility Antigen, B-7 Alpha
Chain: A
Synonym: Mhc Class I Antigen B7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-B, Hlab
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Beta-2-Microglobulin
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Isocitrate Dehydrogenase [Nadp], Mitochondrial
Chain: C
Synonym: Idh,Icd-M,Idp,Nadp(+)-Specific Icdh,Oxalosuccinate Decarboxylase;
Ec: 1.1.1.42
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Fab Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Fab Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.605 42.006 125.180 90.00 92.75 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand NHE, PEG, SO4 enzyme Oxidoreductase E.C.1.1.1.42 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (6uj9.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 6UJ9
  • CSU: Contacts of Structural Units for 6UJ9
  • Structure Factors (217 Kb)
  • Retrieve 6UJ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6UJ9 from S2C, [Save to disk]
  • View 6UJ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6UJ9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6uj9_C] [6uj9_L] [6uj9_B] [6uj9_H] [6uj9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6UJ9
  • Community annotation for 6UJ9 at PDBWiki (http://pdbwiki.org)

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