6UJB Signaling Protein Immune System date Oct 02, 2019
title Integrin Alpha-V Beta-8 In Complex With The Fabs C6d4 And 11
authors M.G.Campbell, A.Cormier, Y.Cheng, S.L.Nishimura
compound source
Molecule: Integrin Alpha-V
Chain: A
Synonym: Vitronectin Receptor,Vitronectin Receptor Subunit
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itgav, Msk8, Vnra, Vtnr
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Cho Lec 3.2.8.1
Expression_system_tissue: Ovary

Molecule: Integrin Beta-8
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itgb8
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Cho Lec 3.2.8.1
Expression_system_tissue: Ovary

Molecule: C6d4 Heavy Chain Fab
Chain: E
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293a
Expression_system_organ: Kidney

Molecule: C6d4 Light Chain Fab
Chain: F
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293a
Expression_system_organ: Kidney
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.51 Å
ligand BMA, CA, MAN, MG, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (6ujb.pdb1.gz) 183 Kb
  • LPC: Ligand-Protein Contacts for 6UJB
  • CSU: Contacts of Structural Units for 6UJB
  • Retrieve 6UJB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6UJB from S2C, [Save to disk]
  • View 6UJB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6UJB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ujb_B] [6ujb_F] [6ujb_A] [6ujb_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6UJB
  • Community annotation for 6UJB at PDBWiki (http://pdbwiki.org)

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