6UJX Viral Protein date Oct 03, 2019
title Hiv-1 Wild-Type Reverse Transcriptase-Dna Complex With (-)-F
authors E.B.Lansdon
compound source
Molecule: P66 Reverse Transcriptasernaseh
Chain: A
Synonym: Exoribonuclease H, P66 Rt
Ec: 3.4.23.16,2.7.7.49,2.7.7.7,3.1.26.13,3.1.13.2,2.7.7.-,3
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus Type 1 Gr Subtype B (Isolate Hxb2);
Organism_common: Hiv-1
Organism_taxid: 11706
Strain: Isolate Hxb2
Gene: Gag-Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: P51 Reverse Transcriptasernaseh
Chain: B
Synonym: Exoribonuclease H, P51 Rt
Ec: 3.4.23.16,2.7.7.49,2.7.7.7,3.1.26.13,3.1.13.2,2.7.7.-,3
Engineered: Yes
Mutation: Yes

Organism_scientific: Human Immunodeficiency Virus Type 1 Gr Subtype B (Isolate Hxb2);
Organism_common: Hiv-1
Organism_taxid: 11706
Strain: Isolate Hxb2
Gene: Gag-Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna Primer
Chain: P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676

Molecule: Dna Template
Chain: T
Engineered: Yes

Synthetic: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
symmetry Space Group: C 2 2 21
R_factor 0.197 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
169.804 167.685 103.309 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 1RY, DOC, MG, SO4 enzyme Hydrolase E.C.3.4.23.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk]
  • Biological Unit Coordinates (6ujx.pdb1.gz) 178 Kb
  • LPC: Ligand-Protein Contacts for 6UJX
  • CSU: Contacts of Structural Units for 6UJX
  • Structure Factors (1842 Kb)
  • Retrieve 6UJX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6UJX from S2C, [Save to disk]
  • View 6UJX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6UJX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ujx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ujx_T] [6ujx_B] [6ujx_P] [6ujx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6UJX
  • Community annotation for 6UJX at PDBWiki (http://pdbwiki.org)

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