6UK4	Immune System	date	Oct 04, 2019
title	Complex Of T Cell Receptor With Hhat Neoantigen Peptide Kqwl Presented By Hla-A206
authors	J.R.Devlin, B.M.Baker
compound		source
Molecule: Mhc Class I Antigen Chain: A Fragment: Unp Residues 25-299 Synonym: Hla-A02:06 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hla-A Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Xl1 Blue
Molecule: Beta-2-Microglobulin Chain: B Fragment: Unp Residues 21-119 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: B2m, Cdabp0092, Hdcma22p Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Xl1 Blue
Molecule: Protein-Cysteine N-Palmitoyltransferase Hhat Chain: C Fragment: Neoantigen Peptide (Unp Residues 68-76) Ec: 2.3.1.- Engineered: Yes Mutation: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: 302 Til T Cell Receptor Alpha Chain Chain: D Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Rosetta 2 De3
Molecule: 302 Til T Cell Receptor Beta Chain Chain: E Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Rosetta 2 De3
symmetry	Space Group: P 21 21 21	R_factor 0.220 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.310 86.507 238.780 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand		enzyme	Transferase E.C.2.3.1 BRENDA
Gene Ontology	Chain Function Process Component B cellular response to iron io...
Primary reference	Structural dissimilarity from self drives neoepitope escape from immune tolerance., Devlin JR, Alonso JA, Ayres CM, Keller GLJ, Bobisse S, Vander Kooi CW, Coukos G, Gfeller D, Harari A, Baker BM, Nat Chem Biol. 2020 Nov;16(11):1269-1276. doi: 10.1038/s41589-020-0610-1. Epub, 2020 Aug 17. PMID:32807968

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (287 Kb) [Save to disk] Biological Unit Coordinates (6uk4.pdb1.gz) 135 Kb Biological Unit Coordinates (6uk4.pdb2.gz) 149 Kb CSU: Contacts of Structural Units for 6UK4 Structure Factors (1076 Kb) Retrieve 6UK4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6UK4 from S2C, [Save to disk]

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Visual 3D analysis of 6UK4

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6uk4_A] [6uk4_D] [6uk4_E] [6uk4_C] [6uk4_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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