6ULI Immune System date Oct 08, 2019
title Molecular Basis For Tumor Infiltrating Tcr Recognition Of Ho Kras-G12d Mutation
authors P.D.Sun, M.J.W.Sim
compound source
Molecule: Hla Class I Antigen
Chain: A
Synonym: Mhc Class I Antigen,Mhc Class I Histocompatibility
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Variant: Hla-C08:02
Gene: Hla-Cw, Hla-C
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Beta-2-Microglobulin
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Gly-Ala-Asp-Gly-Val-Gly-Lys-Ser-Ala
Chain: C
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.199 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.365 76.266 62.696 90.00 118.22 90.00
method X-Ray Diffractionresolution 1.88 Å
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

  • Primary referenceHigh-affinity oligoclonal TCRs define effective adoptive T cell therapy targeting mutant KRAS-G12D., Sim MJW, Lu J, Spencer M, Hopkins F, Tran E, Rosenberg SA, Long EO, Sun PD, Proc Natl Acad Sci U S A. 2020 May 27. pii: 1921964117. doi:, 10.1073/pnas.1921964117. PMID:32461371
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (6uli.pdb1.gz) 132 Kb
  • CSU: Contacts of Structural Units for 6ULI
  • Structure Factors (669 Kb)
  • Retrieve 6ULI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ULI from S2C, [Save to disk]
  • View 6ULI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6ULI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6uli_A] [6uli_C] [6uli_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6ULI
  • Community annotation for 6ULI at PDBWiki (http://pdbwiki.org)

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