6UTK Viral Protein Immune System date Oct 29, 2019
title Crystal Structure Of 438-B11 Fab In Complex With An Uncleave Prefusion Optimized (Ufo) Soluble Bg505 Trimer And Fab 35o2 Angstrom
authors S.Kumar, I.A.Wilson
compound source
Molecule: 35o22 Fab Heavy Chain
Chain: D
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: 35o22 Fab Light Chain
Chain: E
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: B11 Fab Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Envelope Glycoprotein Gp120
Chain: G
Fragment: Unp Residues 30-503
Engineered: Yes

Organism_scientific: Human Immunodeficiency Virus 1
Organism_common: Hiv-1
Organism_taxid: 11676
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Envelope Glycoprotein Gp41
Chain: T
Fragment: Unp Residues 511-546, Linker, Unp Residues 568-66
Engineered: Yes

Organism_scientific: Human Immunodeficiency Virus 1
Organism_common: Hiv-1
Organism_taxid: 11676
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: B11 Fab Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: H 3 2
R_factor 0.299 R_Free 0.317
crystal
cell
length a length b length c angle alpha angle beta angle gamma
247.308 247.308 257.612 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.80 Å
ligand BMA, MAN, NAG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (534 Kb) [Save to disk]
  • Biological Unit Coordinates (6utk.pdb1.gz) 1550 Kb
  • LPC: Ligand-Protein Contacts for 6UTK
  • CSU: Contacts of Structural Units for 6UTK
  • Structure Factors (830 Kb)
  • Retrieve 6UTK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6UTK from S2C, [Save to disk]
  • View 6UTK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6UTK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6utk_T] [6utk_L] [6utk_D] [6utk_G] [6utk_E] [6utk_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6UTK
  • Community annotation for 6UTK at PDBWiki (http://pdbwiki.org)

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