6UXW Transcription Dna date Nov 08, 2019
title Swisnf Nucleosome Complex With Adp-Befx
authors Y.He, Y.Han
compound source
Molecule: Histone H3.2
Chain: R, V
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: S, W
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2a Type 1
Chain: T, X
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b 1.1
Chain: U, Y
Synonym: H2b1.1
Engineered: Yes
Other_details: Residues 597-653 And 765-780 Of Chain F, And 609-655 And 763-779 Of Chain G Are Not Confidently Assigned

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 601 Sequence Bottom Strand
Chain: a
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 601 Sequence Top Strand
Chain: b
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Actin-Related Protein 7
Chain: P
Synonym: Actin-Like Protein Arp7,Chromatin Structure-Remode Complex Protein Arp7,Swisnf Complex Component Arp7;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Actin-Like Protein Arp9
Chain: Q
Synonym: Chromatin Structure-Remodeling Complex Protein Arp Complex Component Arp9;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Regulator Of Ty1 Transposition Protein 102
Chain: Z

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Transcription Regulatory Protein Snf2
Chain: A
Synonym: Atp-Dependent Helicase Snf2,Regulatory Protein Gam Regulatory Protein Swi2,Swisnf Complex Component Snf2,Tran Factor Tye3;
Ec: 3.6.4.-

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Swisnf Chromatin-Remodeling Complex Subunit Swi1
Chain: B
Synonym: Regulatory Protein Gam3,Swisnf Complex Subunit Sw Transcription Regulatory Protein Adr6,Transcription Regulat Protein Swi1;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Swisnf Chromatin-Remodeling Complex Subunit Snf5
Chain: C
Synonym: Swisnf Complex Subunit Snf5,Transcription Factor Transcription Regulatory Protein Snf5;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Swisnf Complex Subunit Swi3
Chain: D, E, F, G
Synonym: Transcription Factor Tye2,Transcription Regulatory Swi3;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Transcription Regulatory Protein Snf12
Chain: H
Synonym: Swisnf Complex Component Swp73

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Transcription Regulatory Protein Snf6
Chain: I
Synonym: Swisnf Complex Component Snf6

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c), Saccharomyces Cerevisiae S288c;
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Unknown Protein
Chain: J, K, L, N, O

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Swisnf Global Transcription Activator Complex Su Swp82;
Chain: M

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 8.96 Å
ligand ADP, BEF, MG, PO4 enzyme Hydrolase E.C.3.6.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


F, E, D, G


H


P


Q


S, W


T, X


V, R


Y, U


Z

  • RSC-type complex
  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (999 Kb) [Save to disk]
  • Biological Unit Coordinates (6uxw.pdb1.gz) 966 Kb
  • LPC: Ligand-Protein Contacts for 6UXW
  • CSU: Contacts of Structural Units for 6UXW
  • Retrieve 6UXW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6UXW from S2C, [Save to disk]
  • View 6UXW in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6UXW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6uxw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6uxw_a] [6uxw_Y] [6uxw_A] [6uxw_W] [6uxw_N] [6uxw_J] [6uxw_b] [6uxw_B] [6uxw_M] [6uxw_U] [6uxw_Z] [6uxw_X] [6uxw_Q] [6uxw_H] [6uxw_S] [6uxw_P] [6uxw_T] [6uxw_R] [6uxw_L] [6uxw_K] [6uxw_C] [6uxw_G] [6uxw_F] [6uxw_I] [6uxw_O] [6uxw_V] [6uxw_E] [6uxw_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6UXW
  • Community annotation for 6UXW at PDBWiki (http://pdbwiki.org)

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