6V0V Recombination Dna date Nov 19, 2019
title Cryo-Em Structure Of Mouse Wt Rag12 Nfc Complex (Dna0)
authors X.Chen, W.Yang, M.Gellert
compound source
Molecule: V(D)J Recombination-Activating Protein 1
Chain: A
Synonym: Rag-1
Ec: 3.1.-.-,2.3.2.27
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Rag1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: V(D)J Recombination-Activating Protein 2
Chain: B
Synonym: Rag-2
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Rag2, Rag-2
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Dna (30-Mer)
Chain: F
Engineered: Yes
Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Dna (30-Mer)
Chain: I
Engineered: Yes
Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.61 Å
ligand CA, ZN enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • methylated histone binding
  • ubiquitin protein ligase act...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (6v0v.pdb1.gz) 147 Kb
  • LPC: Ligand-Protein Contacts for 6V0V
  • CSU: Contacts of Structural Units for 6V0V
  • Retrieve 6V0V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6V0V from S2C, [Save to disk]
    • View 6V0V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6V0V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6v0v_B] [6v0v_I] [6v0v_F] [6v0v_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6V0V
  • Community annotation for 6V0V at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science