6V21 Metal Binding Protein, Oxidoreductase date Nov 21, 2019
title Mouse Heavy Chain Apoferritin Determined Using Single-Partic At 200 Kev
authors M.Wu, G.C.Lander, M.A.Herzik
compound source
Molecule: Ferritin Heavy Chain
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X;
Synonym: Ferritin H Subunit
Ec: 1.16.3.1
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Fth1, Fth
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 1.75 Å
ligand
enzyme Oxidoreductase E.C.1.16.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, V, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U


Primary referenceSub-2 Angstrom resolution structure determination using single-particle cryo-EM at 200keV., Wu M, Lander GC, Herzik MA Jr, J Struct Biol X. 2020 Feb 28;4:100020. doi: 10.1016/j.yjsbx.2020.100020., eCollection 2020. PMID:32647824
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (5875 Kb) [Save to disk]
  • Biological Unit Coordinates (6v21.pdb1.gz) 592 Kb
  • CSU: Contacts of Structural Units for 6V21
  • Retrieve 6V21 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6V21 from S2C, [Save to disk]
    • View 6V21 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6V21
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6v21_O] [6v21_I] [6v21_E] [6v21_K] [6v21_Q] [6v21_A] [6v21_C] [6v21_X] [6v21_M] [6v21_D] [6v21_F] [6v21_P] [6v21_U] [6v21_S] [6v21_T] [6v21_L] [6v21_N] [6v21_V] [6v21_J] [6v21_H] [6v21_B] [6v21_G] [6v21_W] [6v21_R]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6V21
  • Community annotation for 6V21 at PDBWiki (http://pdbwiki.org)

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