6V4F Apoptosis date Nov 27, 2019
title Crystal Structure Analysis Of Zebra Fish Mdmx
authors H.S.Seo, S.Dhe-Paganon
compound source
Molecule: Protein Mdm4
Chain: A
Synonym: Double Minute 4 Protein,Mdm2-Like P53-Binding Prot Protein Mdmx,P53-Binding Protein Mdm4;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Danio Rerio
Organism_common: Zebrafish
Organism_taxid: 7955
Gene: Mdm4, Mdmx
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Stapled Peptide Lsqetf(0eh)Dlwkle(Mk8)En(Nh2)
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: C 2 2 21
R_factor 0.169 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.140 108.160 30.820 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.35 Å
ligand 0EH, MK8, NH2, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (6v4f.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 6V4F
  • CSU: Contacts of Structural Units for 6V4F
  • Structure Factors (1185 Kb)
  • Retrieve 6V4F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6V4F from S2C, [Save to disk]
    • View 6V4F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6V4F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6v4f_B] [6v4f_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6V4F
  • Community annotation for 6V4F at PDBWiki (http://pdbwiki.org)

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