6V65 Oncoprotein date Dec 04, 2019
title Crystal Structure Of Kras(Gmppnp)-Nf1(Grd)-Spred1 Complex
authors W.Yan, D.K.Simanshu
compound source
Molecule: Sprouty-Related, Evh1 Domain-Containing Protein 1
Chain: A
Synonym: Hspred1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Spred1
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469

Molecule: Neurofibromin
Chain: B
Synonym: Neurofibromatosis-Related Protein Nf-1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nf1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Gtpase Kras
Chain: C
Synonym: K-Ras 2,Ki-Ras,C-K-Ras,C-Ki-Ras
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kras, Kras2, Rask2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.221 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.556 70.553 80.311 90.00 99.61 90.00
method X-Ray Diffractionresolution 2.76 Å
ligand FMT, GNP, MG, ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (201 Kb) [Save to disk]
  • Biological Unit Coordinates (6v65.pdb1.gz) 193 Kb
  • LPC: Ligand-Protein Contacts for 6V65
  • CSU: Contacts of Structural Units for 6V65
  • Structure Factors (164 Kb)
  • Retrieve 6V65 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6V65 from S2C, [Save to disk]
  • View 6V65 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6V65
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6v65_A] [6v65_C] [6v65_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6V65
  • Community annotation for 6V65 at PDBWiki (http://pdbwiki.org)

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