6V96 Transferase date Dec 13, 2019
title Agrobacterium Tumefaciens Adp-Glucose Pyrophosphorylase-S72e
authors Y.Zheng, R.Hussien, M.A.Alghamdi, M.A.Ballicora, D.Liu
compound source
Molecule: Glucose-1-Phosphate Adenylyltransferase
Chain: H, A, B, C, D, E, F, G, I, J, K, L, M, N, O, P, Q, R
Synonym: Adp-Glucose Pyrophosphorylase,Adpglc Ppase,Adp-Glu Synthase;
Ec: 2.7.7.27
Engineered: Yes
Mutation: Yes
Organism_scientific: Agrobacterium Fabrum (Strain C58 Atc
Organism_taxid: 176299
Strain: C58 Atcc 33970
Gene: Glgc, Atu4076, Agr_l_1560
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1
R_factor 0.193 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.607 141.187 229.427 107.93 101.73 89.97
method X-Ray Diffractionresolution 1.80 Å
ligand CIT, GOL enzyme Transferase E.C.2.7.7.27 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2909 Kb) [Save to disk]
  • Biological Unit Coordinates (6v96.pdb1.gz) 576 Kb
  • Biological Unit Coordinates (6v96.pdb2.gz) 577 Kb
  • Biological Unit Coordinates (6v96.pdb3.gz) 581 Kb
  • Biological Unit Coordinates (6v96.pdb4.gz) 577 Kb
  • Biological Unit Coordinates (6v96.pdb5.gz) 575 Kb
  • LPC: Ligand-Protein Contacts for 6V96
  • CSU: Contacts of Structural Units for 6V96
  • Structure Factors (29084 Kb)
  • Retrieve 6V96 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6V96 from S2C, [Save to disk]
  • View 6V96 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6V96
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6v96 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6v96_N] [6v96_L] [6v96_J] [6v96_R] [6v96_Q] [6v96_V] [6v96_G] [6v96_M] [6v96_O] [6v96_H] [6v96_I] [6v96_K] [6v96_T] [6v96_A] [6v96_D] [6v96_P] [6v96_F] [6v96_E] [6v96_B] [6v96_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6V96
  • Community annotation for 6V96 at PDBWiki (http://pdbwiki.org)

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