6V9V Transport Protein date Dec 16, 2019
title Structure Of Trpa1 Modified By Bodipy-Iodoacetamide With Bou Calcium, Lmng
authors J.Zhao, J.V.Lin King, C.E.Paulsen, Y.Cheng, D.Julius
compound source
Molecule: Transient Receptor Potential Cation Channel Subfa Member 1;
Chain: A, B, D, C
Synonym: Ankyrin-Like With Transmembrane Domains Protein 1, Transformation-Sensitive Protein P120,Wasabi Receptor;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trpa1, Anktm1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293f
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.60 Å
ligand CA, QT4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • calcium-release channel acti...


    • Primary referenceIrritant-evoked activation and calcium modulation of the TRPA1 receptor., Zhao J, Lin King JV, Paulsen CE, Cheng Y, Julius D, Nature. 2020 Jul 8. pii: 10.1038/s41586-020-2480-9. doi:, 10.1038/s41586-020-2480-9. PMID:32641835
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (357 Kb) [Save to disk]
  • Biological Unit Coordinates (6v9v.pdb1.gz) 337 Kb
  • LPC: Ligand-Protein Contacts for 6V9V
  • CSU: Contacts of Structural Units for 6V9V
  • Retrieve 6V9V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6V9V from S2C, [Save to disk]
    • View 6V9V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6V9V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6v9v_C] [6v9v_B] [6v9v_A] [6v9v_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6V9V
  • Community annotation for 6V9V at PDBWiki (http://pdbwiki.org)

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