6VCV Isomerase date Dec 23, 2019
title Aspergillus Fumigatus Fkbp12 Protein Bound With Apx879 In P1 Group
authors S.Gobeil, L.Spicer
compound source
Molecule: Fk506-Binding Protein 1a
Chain: A, B
Synonym: Fkbp,Peptidyl-Prolyl Cis-Trans Isomerase,Ppiase,Ra Binding Protein;
Ec: 5.2.1.8
Engineered: Yes
 Organism_scientific: Neosartorya Fumigata (Strain Atcc Mya- Af293 Cbs 101355 Fgsc A1100);
Organism_taxid: 330879
Strain: Atcc Mya-4609 Af293 Cbs 101355 Fgsc A1100
Gene: Fpr1a, Afua_6g12170
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1
R_factor 0.177 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.562 39.620 40.771 76.82 89.92 85.74
method X-Ray Diffractionresolution 1.60 Å
ligand R27 enzyme Isomerase E.C.5.2.1.8 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (6vcv.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (6vcv.pdb2.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 6VCV
  • CSU: Contacts of Structural Units for 6VCV
  • Structure Factors (901 Kb)
  • Retrieve 6VCV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VCV from S2C, [Save to disk]
    • View 6VCV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6VCV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vcv_B] [6vcv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6VCV
  • Community annotation for 6VCV at PDBWiki (http://pdbwiki.org)

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