6VI4 Membrane Protein date Jan 11, 2020
title Nanobody-Enabled Monitoring Of Kappa Opioid Receptor States
authors T.Che, B.L.Roth
compound source
Molecule: Kappa Opioid Receptor
Chain: A, B
Synonym: Kor-1
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Oprk1, Oprk
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Nanobody 6
Chain: C, D
Engineered: Yes
Organism_scientific: Lama Glama
Organism_taxid: 9844
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 2 21
R_factor 0.242 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.394 108.191 155.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand CLR, JDC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (6vi4.pdb1.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 6VI4
  • CSU: Contacts of Structural Units for 6VI4
  • Structure Factors (620 Kb)
  • Retrieve 6VI4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VI4 from S2C, [Save to disk]
    • View 6VI4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6VI4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vi4_A] [6vi4_C] [6vi4_D] [6vi4_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6VI4
  • Community annotation for 6VI4 at PDBWiki (http://pdbwiki.org)

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