6VMS Signaling Protein date Jan 28, 2020
title Structure Of A D2 Dopamine Receptor-G-Protein Complex In A L Membrane
authors J.Yin, K.M.Chen, M.J.Clark, M.Hijazi, P.Kumari, X.Bai, R.K.Sunahar P.Barth, D.M.Rosenbaum
compound source
Molecule: Guanine Nucleotide-Binding Protein G(I) Subunit A
Chain: A
Synonym: Adenylate Cyclase-Inhibiting G Alpha Protein
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Gnai1, Gnai-1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Guanine Nucleotide-Binding Protein G(I)G(S)G(T) Beta-1;
Chain: B
Synonym: Transducin Beta Chain 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gnb1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Guanine Nucleotide-Binding Protein G(I)G(S)G(O) Gamma-2;
Chain: C
Synonym: G Gamma-I
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gng2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Scfv16
Chain: E
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Endolysin,D(2) Dopamine Receptor,D(2) Dopamine Re
Chain: R
Synonym: Lysis Protein,Lysozyme,Muramidase,Dopamine D2 Rece Dopamine D2 Receptor;
Ec: 3.2.1.17
Engineered: Yes

Organism_scientific: Enterobacteria Phage T4, Homo Sapiens
Organism_common: Human
Organism_taxid: 10665, 9606
Gene: E, T4tp126, Drd2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
ligand 08Y enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • G-protein coupled acetylchol...

  • C


    R


    Primary referenceStructure of a D2 dopamine receptor-G-protein complex in a lipid membrane., Yin J, Chen KM, Clark MJ, Hijazi M, Kumari P, Bai XC, Sunahara RK, Barth P, Rosenbaum DM, Nature. 2020 Jun 11. pii: 10.1038/s41586-020-2379-5. doi:, 10.1038/s41586-020-2379-5. PMID:32528175
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (6vms.pdb1.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 6VMS
  • CSU: Contacts of Structural Units for 6VMS
  • Retrieve 6VMS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VMS from S2C, [Save to disk]
  • View 6VMS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6VMS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vms_A] [6vms_C] [6vms_B] [6vms_R] [6vms_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6VMS
  • Community annotation for 6VMS at PDBWiki (http://pdbwiki.org)

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