6VPF Transferase date Feb 03, 2020
title Estrogen Receptor Alpha Ligand Binding Domain In Complex Wit Selective Estrogen Receptor Modulator Clomiphene
authors S.W.Fanning, G.L.Greene
compound source
Molecule: Estrogen Receptor
Chain: B, A, C, D
Synonym: Er,Er-Alpha,Estradiol Receptor,Nuclear Receptor Su Group A Member 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Esr1, Esr, Nr3a1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32
R_factor 0.201 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.330 58.330 275.880 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
ligand 53Q enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (326 Kb) [Save to disk]
  • Biological Unit Coordinates (6vpf.pdb1.gz) 160 Kb
  • Biological Unit Coordinates (6vpf.pdb2.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 6VPF
  • CSU: Contacts of Structural Units for 6VPF
  • Structure Factors (2908 Kb)
  • Retrieve 6VPF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VPF from S2C, [Save to disk]
  • View 6VPF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6VPF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vpf_C] [6vpf_B] [6vpf_D] [6vpf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6VPF
  • Community annotation for 6VPF at PDBWiki (http://pdbwiki.org)

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