6VSB Viral Protein date Feb 10, 2020
title Prefusion 2019-Ncov Spike Glycoprotein With A Single Recepto Domain Up
authors D.Wrapp, N.Wang, K.S.Corbett, J.A.Goldsmith, C.Hsieh, O.Abiona, B. J.S.Mclellan
compound source
Molecule: Spike Glycoprotein
Chain: A, B, C
Synonym: S Glycoprotein,E2,Peplomer Protein,Sars-Cov-2 Spik Glycoprotein;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: S, 2
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.46 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (432 Kb) [Save to disk]
  • Biological Unit Coordinates (6vsb.pdb1.gz) 408 Kb
  • LPC: Ligand-Protein Contacts for 6VSB
  • CSU: Contacts of Structural Units for 6VSB
  • Retrieve 6VSB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VSB from S2C, [Save to disk]
    • View 6VSB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6VSB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vsb_B] [6vsb_C] [6vsb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6VSB
  • Community annotation for 6VSB at PDBWiki (http://pdbwiki.org)

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