6VYO Viral Protein date Feb 27, 2020
title Crystal Structure Of Rna Binding Domain Of Nucleocapsid Phos From Sars Coronavirus 2
authors C.Chang, K.Michalska, R.Jedrzejczak, N.Maltseva, M.Endres, A.Godz A.Joachimiak, Center For Structural Genomics Of Infectious D (Csgid)
compound source
Molecule: Nucleoprotein
Chain: A, B, C, D
Fragment: Rna Binding Domain
Synonym: Nucleocapsid Protein,Protein N
Engineered: Yes
Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.159 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.238 77.430 114.039 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand CL, GOL, MES, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]
  • Biological Unit Coordinates (6vyo.pdb1.gz) 179 Kb
  • LPC: Ligand-Protein Contacts for 6VYO
  • CSU: Contacts of Structural Units for 6VYO
  • Structure Factors (1926 Kb)
  • Retrieve 6VYO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VYO from S2C, [Save to disk]
  • View 6VYO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6VYO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6vyo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vyo_A] [6vyo_D] [6vyo_C] [6vyo_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6VYO
  • Community annotation for 6VYO at PDBWiki (http://pdbwiki.org)

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