6W1A Dna Binding Protein Dna date Mar 03, 2020
title Crystal Structure Of Streptococcus Dysgalactiae Shp Pheromon Rgg2 Bound To Dna
authors G.C.Capodagli, M.B.Neiditch
compound source
Molecule: Transcriptional Regulator
Chain: A, B
Engineered: Yes
Organism_scientific: Streptococcus Dysgalactiae
Organism_taxid: 1334
Gene: Mutr
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (30-Mer)
Chain: E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Streptococcus Dysgalactiae
Organism_taxid: 1334

Molecule: Dna (30-Mer)
Chain: F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Streptococcus Dysgalactiae
Organism_taxid: 1334
symmetry Space Group: P 65
R_factor 0.234 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.269 110.269 173.984 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand GOL, PO4 enzyme
Primary referenceStructure-function studies of Rgg binding to pheromones and target promoters reveal a model of transcription factor interplay., Capodagli GC, Tylor KM, Kaelber JT, Petrou VI, Federle MJ, Neiditch MB, Proc Natl Acad Sci U S A. 2020 Sep 29;117(39):24494-24502. doi:, 10.1073/pnas.2008427117. Epub 2020 Sep 9. PMID:32907945
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (223 Kb) [Save to disk]
  • Biological Unit Coordinates (6w1a.pdb1.gz) 217 Kb
  • LPC: Ligand-Protein Contacts for 6W1A
  • CSU: Contacts of Structural Units for 6W1A
  • Structure Factors (763 Kb)
  • Retrieve 6W1A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6W1A from S2C, [Save to disk]
  • View 6W1A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6W1A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6w1a_E] [6w1a_A] [6w1a_F] [6w1a_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6W1A
  • Community annotation for 6W1A at PDBWiki (http://pdbwiki.org)

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