6W2M	Transferase Dna	date	Mar 06, 2020
title	Abortive Ternary Complex Crystal Structure Of Dna Polymerase 8og-Dc Base Pair At The Primer Terminus And Flipped Out Da
authors	V.K.Batra, S.H.Wilson
compound		source
Molecule: Dna Polymerase Beta Chain: A Ec: 2.7.7.7,4.2.99.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Polb Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Tap56 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pwl-11
Molecule: Template Strand Chain: T Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Primer Strand Chain: P Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Downstream Primer Strand Chain: D Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 1 21 1	R_factor 0.193 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.751 80.462 55.612 90.00 107.75 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	8OG, CL, MG, NA, SFV	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of a DNA polymerase abortive complex with the 8OG:dA base pair at the primer terminus., Batra VK, Wilson SH, Commun Biol. 2020 Jul 3;3(1):348. doi: 10.1038/s42003-020-1080-4. PMID:32620932

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk] Biological Unit Coordinates (6w2m.pdb1.gz) 75 Kb LPC: Ligand-Protein Contacts for 6W2M CSU: Contacts of Structural Units for 6W2M Structure Factors (259 Kb) Retrieve 6W2M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6W2M from S2C, [Save to disk]

View 6W2M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6W2M

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6w2m_D] [6w2m_A] [6w2m_T] [6w2m_P] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6W2M

Community annotation for 6W2M at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---