6W37 Viral Protein date Mar 09, 2020
title Structure Of The Sars-Cov-2 Orf7a Encoded Accessory Protein
authors C.A.Nelson, G.Minasov, L.Shuvalova, D.H.Fremont, Center For Stru Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: Orf7a Protein
Chain: A
Fragment: H-2kb Residues 1-277
Synonym: Sars-Cov-2 Accessory Protein 7a,Protein U122,Prote Orf7a,Accessory Protein 7a,Protein 7a;
Engineered: Yes
Other_details: Ectodomain, The First And Last Residue Were
 Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: 7a
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: P 31 2 1
R_factor 0.236 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.393 57.393 55.918 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • Biological Unit Coordinates (6w37.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 6W37
  • Structure Factors (66 Kb)
  • Retrieve 6W37 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6W37 from S2C, [Save to disk]
    • View 6W37 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6W37
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6w37_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6W37
  • Community annotation for 6W37 at PDBWiki (http://pdbwiki.org)

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