6W6K Ribosome date Mar 17, 2020
title 30s-Activated-High-Mg2+
authors D.Jahagirdar, V.Jha, B.Basu, J.Gomez-Blanco, J.Vargas, J.Ortega
compound source
Molecule: 16s Rrna
Chain: A
 Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12

Molecule: 30s Ribosomal Protein S3
Chain: C
Synonym: Small Ribosomal Subunit Protein Us3
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12

Molecule: 30s Ribosomal Protein S4
Chain: D
Synonym: Small Ribosomal Subunit Protein Us4
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12

Molecule: 30s Ribosomal Protein S5
Chain: E
Synonym: Small Ribosomal Subunit Protein Us5
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12

Molecule: 30s Ribosomal Protein S6
Chain: F
Synonym: Small Ribosomal Subunit Protein Bs6
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12

Molecule: 30s Ribosomal Protein S8
Chain: H
Synonym: Small Ribosomal Subunit Protein Us8
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12

Molecule: 30s Ribosomal Protein S9
Chain: I
Synonym: Small Ribosomal Subunit Protein Us9
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12

Molecule: 30s Ribosomal Protein S10
Chain: J
Synonym: Small Ribosomal Subunit Protein Us10
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12

Molecule: 30s Ribosomal Protein S11
Chain: K
Synonym: Small Ribosomal Subunit Protein Us11
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12

Molecule: 30s Ribosomal Protein S12
Chain: L
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12

Molecule: 30s Ribosomal Protein S13
Chain: M
Synonym: Small Ribosomal Subunit Protein Us13
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12

Molecule: 30s Ribosomal Protein S14
Chain: N
Synonym: Small Ribosomal Subunit Protein Us14
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12

Molecule: 30s Ribosomal Protein S15
Chain: O
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12

Molecule: 30s Ribosomal Protein S16
Chain: P
Synonym: Small Ribosomal Subunit Protein Bs16
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12

Molecule: 30s Ribosomal Protein S17
Chain: Q
Synonym: Small Ribosomal Subunit Protein Us17
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12

Molecule: 30s Ribosomal Protein S18
Chain: R
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12

Molecule: 30s Ribosomal Protein S19
Chain: S
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12

Molecule: 30s Ribosomal Protein S20
Chain: T
Synonym: Small Ribosomal Subunit Protein Bs20
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.60 Å
ligand MG enzyme
Primary referenceAlternative Conformations and Motions Adopted by 30S Ribosomal Subunits Visualized by Cryo-Electron Microscopy., Jahagirdar D, Jha V, Basu K, Gomez-Blanco J, Vargas J, Ortega J, RNA. 2020 Sep 28. pii: rna.075846.120. doi: 10.1261/rna.075846.120. PMID:32989043
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (811 Kb) [Save to disk]
  • Biological Unit Coordinates (6w6k.pdb1.gz) 805 Kb
  • LPC: Ligand-Protein Contacts for 6W6K
  • CSU: Contacts of Structural Units for 6W6K
  • Retrieve 6W6K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6W6K from S2C, [Save to disk]
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    • Visual 3D analysis of 6W6K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6w6k_H] [6w6k_D] [6w6k_J] [6w6k_P] [6w6k_T] [6w6k_C] [6w6k_N] [6w6k_L] [6w6k_O] [6w6k_R] [6w6k_F] [6w6k_A] [6w6k_E] [6w6k_S] [6w6k_M] [6w6k_Q] [6w6k_K] [6w6k_I]
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  • Domain organization of by SWISSPFAM
    • Other resources with information on 6W6K
  • Community annotation for 6W6K at PDBWiki (http://pdbwiki.org)

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