6W79 Viral Protein Inhibitor date Mar 18, 2020
title Structure Of Sars-Cov Main Protease Bound To Potent Broad-Sp Non-Covalent Inhibitor X77
authors A.D.Mesecar, S.Stjohn, Center For Structural Genomics Of Infec Diseases (Csgid)
compound source
Molecule: Main Protease
Chain: A
Engineered: Yes
Organism_scientific: Sars-Cov-2
Organism_taxid: 2697049
Strain: Covid-19
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: C 1 2 1
R_factor 0.156 R_Free 0.177
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.881 81.260 53.455 90.00 104.23 90.00
method X-Ray Diffractionresolution 1.46 Å
ligand DMS, MES, X77 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (6w79.pdb1.gz) 227 Kb
  • LPC: Ligand-Protein Contacts for 6W79
  • CSU: Contacts of Structural Units for 6W79
  • Structure Factors (2463 Kb)
  • Retrieve 6W79 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6W79 from S2C, [Save to disk]
  • View 6W79 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6W79
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6w79_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6W79
  • Community annotation for 6W79 at PDBWiki (http://pdbwiki.org)

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