6W90 De Novo Protein date Mar 21, 2020
title De Novo Designed Ntf2 Fold Protein Nt-9
authors M.C.Thompson, X.Pan, L.Liu, J.S.Fraser, T.Kortemme
compound source
Molecule: Ntf2 Fold Protein Loop-Helix-Loop Design Nt-9
Chain: A
Engineered: Yes
 Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.186 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.500 51.990 66.410 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand 3PE enzyme
Primary referenceExpanding the space of protein geometries by computational design of de novo fold families., Pan X, Thompson MC, Zhang Y, Liu L, Fraser JS, Kelly MJS, Kortemme T, Science. 2020 Aug 28;369(6507):1132-1136. doi: 10.1126/science.abc0881. PMID:32855341
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (6w90.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 6W90
  • CSU: Contacts of Structural Units for 6W90
  • Structure Factors (294 Kb)
  • Retrieve 6W90 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6W90 from S2C, [Save to disk]
    • View 6W90 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6W90
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6w90_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6W90
  • Community annotation for 6W90 at PDBWiki (http://pdbwiki.org)

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