6WAY Signaling Protein date Mar 26, 2020
title C-Terminal Sh2 Domain Of P120rasgap In Complex With P190rhog Phosphotyrosine Peptide
authors R.Jaber Chehayeb, J.Wang, A.L.Stiegler, T.J.Boggon
compound source
Molecule: Ras Gtpase-Activating Protein 1
Chain: A
Synonym: Rasgap,Ras P21 Protein Activator,P120gap
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rasa1, Gap, Rasa
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta

Molecule: Rho Gtpase-Activating Protein 35
Chain: V
Synonym: Glucocorticoid Receptor Dna-Binding Factor 1,Gluco Receptor Repression Factor 1,Grf-1,Rho Gap P190a,P190-A;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 2 2 21
R_factor 0.165 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.119 83.910 54.239 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand ACE, NH2, PTR enzyme
Primary referenceThe GTPase-activating protein p120RasGAP has an evolutionarily conserved "FLVR-unique" SH2 domain., Jaber Chehayeb R, Wang J, Stiegler AL, Boggon TJ, J Biol Chem. 2020 Jun 15. pii: RA120.013976. doi: 10.1074/jbc.RA120.013976. PMID:32540970
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (6way.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 6WAY
  • CSU: Contacts of Structural Units for 6WAY
  • Structure Factors (297 Kb)
  • Retrieve 6WAY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WAY from S2C, [Save to disk]
  • View 6WAY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6WAY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6way_V] [6way_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6WAY
  • Community annotation for 6WAY at PDBWiki (http://pdbwiki.org)

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