6WB0 Viral Protein Rna date Mar 26, 2020
title +3 Extended Hiv-1 Reverse Transcriptase Initiation Complex C Translocation State)
authors K.P.Larsen, L.N.Jackson, K.Kappel, J.Zhang, E.V.Puglisi
compound source
Molecule: Reverse Transcriptaseribonuclease H
Chain: A
Ec: 2.7.7.49,2.7.7.7,3.1.26.13
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_common: Hiv-1
Organism_taxid: 11676
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Reverse Transcriptase P51 Subunit
Chain: B
Engineered: Yes
Mutation: Yes

Organism_scientific: Human Immunodeficiency Virus 1
Organism_common: Hiv-1
Organism_taxid: 11676
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Hiv-1 Viral Rna Genome Fragment
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_common: Hiv-1
Organism_taxid: 11676

Molecule: Trna Lysine 3
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.20 Å
ligand
enzyme Transferase E.C.2.7.7.49 BRENDA
Primary referenceDistinct Conformational States Underlie Pausing during Initiation of HIV-1 Reverse Transcription., Larsen KP, Choi J, Jackson LN, Kappel K, Zhang J, Ha B, Chen DH, Puglisi EV, J Mol Biol. 2020 Jun 5. pii: S0022-2836(20)30390-9. doi:, 10.1016/j.jmb.2020.06.003. PMID:32512005
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (6wb0.pdb1.gz) 153 Kb
  • CSU: Contacts of Structural Units for 6WB0
  • Retrieve 6WB0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WB0 from S2C, [Save to disk]
  • View 6WB0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6WB0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6wb0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wb0_C] [6wb0_A] [6wb0_D] [6wb0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6WB0
  • Community annotation for 6WB0 at PDBWiki (http://pdbwiki.org)

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