6WKH	Metal Binding Protein, Lyase Inhibitor	date	Apr 16, 2020
title	Crystal Structure Of Pentalenene Synthase Mutant F76w Comple 12,13-Difluorofarnesyl Diphosphate
authors	R.Prem Kumar, J.O.Matos, D.D.Oprian
compound		source
Molecule: Pentalenene Synthase Chain: A, B Synonym: Ps,Pentalenolactone Biosynthesis Protein A,Sesquit Cyclase,Sesquiterpene Synthase; Ec: 4.2.3.7 Engineered: Yes Mutation: Yes		Organism_scientific: Streptomyces Sp. Organism_taxid: 1931 Gene: Pena Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 63	R_factor 0.225 R_Free 0.256
crystal cell	length a length b length c angle alpha angle beta angle gamma 185.019 185.019 56.930 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.55 Å
ligand	FDF	enzyme	Lyase E.C.4.2.3.7 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Mechanism Underlying Anti-Markovnikov Addition in the Reaction of Pentalenene Synthase., Matos JO, Kumar RP, Ma AC, Patterson M, Krauss IJ, Oprian DD, Biochemistry. 2020 Aug 18. doi: 10.1021/acs.biochem.0c00518. PMID:32786410

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk] Biological Unit Coordinates (6wkh.pdb1.gz) 45 Kb Biological Unit Coordinates (6wkh.pdb2.gz) 48 Kb LPC: Ligand-Protein Contacts for 6WKH CSU: Contacts of Structural Units for 6WKH Structure Factors (2155 Kb) Retrieve 6WKH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6WKH from S2C, [Save to disk]

View 6WKH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6WKH

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6wkh_A] [6wkh_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6WKH

Community annotation for 6WKH at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---