6WU1 Membrane Protein date May 04, 2020
title Structure Of Apo Laindy
authors D.B.Sauer, J.J.Marden, N.C.Cocco, J.M.Song, D.N.Wang, New York Co On Membrane Protein Structure (Nycomps)
compound source
Molecule: Dass Family Sodium-Coupled Anion Symporter
Chain: A, B
Engineered: Yes
 Organism_scientific: Lactobacillus Acidophilus
Organism_taxid: 1579
Gene: D7h66_01865
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.09 Å
ligand D10, HEX, OCT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for the reaction cycle of DASS dicarboxylate transporters., Sauer DB, Trebesch N, Marden JJ, Cocco N, Song J, Koide A, Koide S, Tajkhorshid E, Wang DN, Elife. 2020 Sep 1;9. pii: 61350. doi: 10.7554/eLife.61350. PMID:32869741
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (276 Kb) [Save to disk]
  • Biological Unit Coordinates (6wu1.pdb1.gz) 269 Kb
  • LPC: Ligand-Protein Contacts for 6WU1
  • CSU: Contacts of Structural Units for 6WU1
  • Retrieve 6WU1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WU1 from S2C, [Save to disk]
    • View 6WU1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6WU1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wu1_A] [6wu1_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6WU1
  • Community annotation for 6WU1 at PDBWiki (http://pdbwiki.org)

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