6WV9 Membrane Protein date May 05, 2020
title Takifugu Rubripes Vkor-Like With Vitamin K1 In Noncatalytic
authors S.Liu, N.Sukumar, W.Li
compound source
Molecule: Vitamin K Epoxide Reductase-Like Protein, Termini Restrained By Green Fluorescent Protein;
Chain: A
Ec: 1.17.4.4
Engineered: Yes
 Organism_scientific: Aequorea Victoria, Takifugu Rubripes
Organism_common: Jellyfish, Japanese Pufferfish, Fugu Rubri
Organism_taxid: 6100, 31033
Gene: Gfp, Vkorc1l1
Expression_system: Komagataella Pastoris
Expression_system_taxid: 4922
symmetry Space Group: C 1 2 1
R_factor 0.223 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
153.730 49.321 84.473 90.00 112.69 90.00
method X-Ray Diffractionresolution 3.35 Å
ligand CRO enzyme Oxidoreductase E.C.1.17.4.4 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (6wv9.pdb1.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 6WV9
  • CSU: Contacts of Structural Units for 6WV9
  • Structure Factors (214 Kb)
  • Retrieve 6WV9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WV9 from S2C, [Save to disk]
    • View 6WV9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6WV9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wv9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6WV9
  • Community annotation for 6WV9 at PDBWiki (http://pdbwiki.org)

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