6WW4 Gene Regulation date May 07, 2020
title Crystal Structure Of Herc2 Zz Domain In Complex With Histone
authors J.Liu, K.R.Vann, T.G.Kutateladze
compound source
Molecule: Histone H3.1,E3 Ubiquitin-Protein Ligase Herc2
Chain: B, A
Fragment: Fusion Protein
Ec: 2.3.2.26
Engineered: Yes
Other_details: Residues 1-6 Of This Construct Belong To His
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: H3c1, H3fa, Hist1h3a, H3c2, H3fl, Hist1h3b, H3c3, H3f Hist1h3c, H3c4, H3fb, Hist1h3d, H3c6, H3fd, Hist1h3e, H3c7, Hist1h3f, H3c8, H3fh, Hist1h3g, H3c10, H3fk, Hist1h3h, H3c1 Hist1h3i, H3c12, H3fj, Hist1h3j, Herc2;
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
symmetry Space Group: P 1 21 1
R_factor 0.199 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
24.933 76.439 33.012 90.00 102.52 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand GOL, ZN enzyme Transferase E.C.2.3.2.26 BRENDA
Primary referenceStructural Insight into Binding of the ZZ Domain of HERC2 to Histone H3 and SUMO1., Liu J, Xue Z, Zhang Y, Vann KR, Shi X, Kutateladze TG, Structure. 2020 Jul 23. pii: S0969-2126(20)30236-7. doi:, 10.1016/j.str.2020.07.003. PMID:32726574
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (6ww4.pdb1.gz) 10 Kb
  • Biological Unit Coordinates (6ww4.pdb2.gz) 11 Kb
  • LPC: Ligand-Protein Contacts for 6WW4
  • CSU: Contacts of Structural Units for 6WW4
  • Structure Factors (36 Kb)
  • Retrieve 6WW4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WW4 from S2C, [Save to disk]
  • View 6WW4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6WW4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ww4_A] [6ww4_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6WW4
  • Community annotation for 6WW4 at PDBWiki (http://pdbwiki.org)

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