6WYG Oxidoreductase date May 12, 2020
title Crystal Structure Of Human H-Chain Ferritin Variant 157c Del Modified With A Raft Agent
authors J.B.Bailey, L.Zhang
compound source
Molecule: Ferritin Heavy Chain
Chain: A, B, C, D
Synonym: Ferritin H Subunit,Cell Proliferation-Inducing Gen Protein;
Ec: 1.16.3.1
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fth1, Fth, Fthl6, Oksw-Cl.84, Pig15
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3 2
R_factor 0.198 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.810 126.810 281.285 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.27 Å
ligand CA, FE, RFT enzyme Oxidoreductase E.C.1.16.3.1 BRENDA
Primary referenceAnisotropic Dynamics and Mechanics of Macromolecular Crystals Containing Lattice-Patterned Polymer Networks., Han K, Bailey JB, Zhang L, Tezcan FA, J Am Chem Soc. 2020 Oct 30. doi: 10.1021/jacs.0c10065. PMID:33124805
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk]
  • Biological Unit Coordinates (6wyg.pdb1.gz) 1384 Kb
  • LPC: Ligand-Protein Contacts for 6WYG
  • CSU: Contacts of Structural Units for 6WYG
  • Structure Factors (1738 Kb)
  • Retrieve 6WYG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WYG from S2C, [Save to disk]
    • View 6WYG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6WYG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wyg_C] [6wyg_A] [6wyg_B] [6wyg_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6WYG
  • Community annotation for 6WYG at PDBWiki (http://pdbwiki.org)

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