6WZQ Viral Protein date May 14, 2020
title Structure Of Sars-Cov-2 Nucleocapsid Dimerization Domain, P2
authors Q.Ye, K.D.Corbett
compound source
Molecule: Nucleoprotein
Chain: A, B, C, D
Synonym: Nucleocapsid Protein,Protein N
Engineered: Yes
 Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.167 R_Free 0.180
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.146 43.546 74.233 90.00 94.87 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceArchitecture and self-assembly of the SARS-CoV-2 nucleocapsid protein., Ye Q, West AMV, Silletti S, Corbett KD, bioRxiv. 2020 May 17. doi: 10.1101/2020.05.17.100685. PMID:32511359
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (232 Kb) [Save to disk]
  • Biological Unit Coordinates (6wzq.pdb1.gz) 113 Kb
  • Biological Unit Coordinates (6wzq.pdb2.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 6WZQ
  • CSU: Contacts of Structural Units for 6WZQ
  • Structure Factors (3019 Kb)
  • Retrieve 6WZQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WZQ from S2C, [Save to disk]
    • View 6WZQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6WZQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wzq_D] [6wzq_C] [6wzq_A] [6wzq_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6WZQ
  • Community annotation for 6WZQ at PDBWiki (http://pdbwiki.org)

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