6X5S	Transferase	date	May 26, 2020
title	Human Alpha-1,6-Fucosyltransferase (Fut8) Bound To Gdp And A
authors	R.Kadirvelraj, Z.A.Wood
compound		source
Molecule: Alpha-(1,6)-Fucosyltransferase Chain: A, B Synonym: Alpha1-6fuct,Fucosyltransferase 8,Gdp-L-Fuc:N-Acet Glucosaminide Alpha1,6-Fucosyltransferase,Gdp-Fucose--Glyco Fucosyltransferase,Glycoprotein 6-Alpha-L-Fucosyltransferas Ec: 2.4.1.68 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fut8 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293 Expression_system_cell: Hek293
Molecule: A3'-Asn Chain: C, D		Organism_scientific: Gallus Gallus Organism_taxid: 9031
symmetry	Space Group: P 65 2 2	R_factor 0.198 R_Free 0.224
crystal cell	length a length b length c angle alpha angle beta angle gamma 150.500 150.500 480.310 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.30 Å
ligand	BMA, CL, GDP, GOL, MAN, NAG	enzyme	Transferase E.C.2.4.1.68 BRENDA
Primary reference	Characterizing human alpha-1,6-fucosyltransferase (FUT8) substrate specificity and structural similarities with related fucosyltransferases., Boruah BM, Kadirvelraj R, Liu L, Ramiah A, Li C, Zong G, Bosman GP, Yang JY, Wang LX, Boons GJ, Wood ZA, Moremen KW, J Biol Chem. 2020 Oct 1. pii: RA120.014625. doi: 10.1074/jbc.RA120.014625. PMID:33004438

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (324 Kb) [Save to disk] Biological Unit Coordinates (6x5s.pdb1.gz) 316 Kb LPC: Ligand-Protein Contacts for 6X5S CSU: Contacts of Structural Units for 6X5S Structure Factors (490 Kb) Retrieve 6X5S in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6X5S from S2C, [Save to disk]

View 6X5S in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6X5S

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6x5s_D] [6x5s_C] [6x5s_B] [6x5s_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6X5S

Community annotation for 6X5S at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---