6X6Z Replication Dna date May 29, 2020
title Rev1 Ternary Complex With Dctp And Ca2+
authors T.M.Weaver, B.D.Freudenthal
compound source
Molecule: Dna (5'-D(Gpgpgpgptpgptpgpgptpapg)-3'
Chain: P
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'- D(Cpaptpcpgpcptpapcpcpapcpapcpcpcpc)-3');
Chain: T
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna Repair Protein Rev1
Chain: A
Synonym: Reversionless Protein 1
Ec: 2.7.7.-
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rev1, Yor346w, O6339
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.376 73.947 117.290 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand CA, DCP, GOL enzyme Transferase E.C.2.7.7 BRENDA
Primary referenceVisualizing Rev1 catalyze protein-template DNA synthesis., Weaver TM, Cortez LM, Khoang TH, Washington MT, Agarwal PK, Freudenthal BD, Proc Natl Acad Sci U S A. 2020 Oct 13;117(41):25494-25504. doi:, 10.1073/pnas.2010484117. Epub 2020 Sep 30. PMID:32999062
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (6x6z.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 6X6Z
  • CSU: Contacts of Structural Units for 6X6Z
  • Structure Factors (2564 Kb)
  • Retrieve 6X6Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6X6Z from S2C, [Save to disk]
  • View 6X6Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6X6Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6x6z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6x6z_A] [6x6z_P] [6x6z_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6X6Z
  • Community annotation for 6X6Z at PDBWiki (http://pdbwiki.org)

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