6X71	Replication Dna	date	May 29, 2020
title	Rev1 Mg2+-Facilitated Intermediate Complex With Reactant Dct Product Dcmp
authors	T.M.Weaver, B.D.Freudenthal
compound		source
Molecule: Dna (5'-D(Gpgpgpgptpgptpgpgptpapgpc Chain: P Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'- D(Cpaptpcpgpcptpapcpcpapcpapcpcpcpc)-3'); Chain: T Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna Repair Protein Rev1 Chain: A Synonym: Reversionless Protein 1 Ec: 2.7.7.- Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Rev1, Yor346w, O6339 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.184 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.269 73.713 117.221 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.78 Å
ligand	DCP, GOL, MG, POP	enzyme	Transferase E.C.2.7.7 BRENDA
Primary reference	Visualizing Rev1 catalyze protein-template DNA synthesis., Weaver TM, Cortez LM, Khoang TH, Washington MT, Agarwal PK, Freudenthal BD, Proc Natl Acad Sci U S A. 2020 Oct 13;117(41):25494-25504. doi:, 10.1073/pnas.2010484117. Epub 2020 Sep 30. PMID:32999062

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk] Biological Unit Coordinates (6x71.pdb1.gz) 95 Kb LPC: Ligand-Protein Contacts for 6X71 CSU: Contacts of Structural Units for 6X71 Structure Factors (1230 Kb) Retrieve 6X71 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6X71 from S2C, [Save to disk]

View 6X71 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6X71

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6x71_T] [6x71_P] [6x71_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6X71

Community annotation for 6X71 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---