6X8Z	Oxidoreductase	date	Jun 02, 2020
title	Crystal Structure Of N-Truncated Human B12 Chaperone Cbld(C2 Thiolato-Cob(III)Alamin Complex (108-296)
authors	R.Mascarenhas, Z.Li, M.Koutmos, R.Banerjee
compound		source
Molecule: Methylmalonic Aciduria And Homocystinuria Type D Mitochondrial; Chain: A, B Fragment: Unp Residues 108-296 Synonym: Cbld Ec: 1.-.-.- Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mmadhc, C2orf25, Cl25022, Hspc161, My011 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.249 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.222 69.776 64.266 90.00 101.15 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	B12	enzyme	Oxidoreductase E.C.1 BRENDA
Primary reference	An Interprotein Co-S Coordination Complex in the B12-Trafficking Pathway., Li Z, Mascarenhas R, Twahir UT, Kallon A, Deb A, Yaw M, Penner-Hahn J, Koutmos M, Warncke K, Banerjee R, J Am Chem Soc. 2020 Sep 14. doi: 10.1021/jacs.0c06590. PMID:32871076

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk] Biological Unit Coordinates (6x8z.pdb1.gz) 50 Kb Biological Unit Coordinates (6x8z.pdb2.gz) 49 Kb LPC: Ligand-Protein Contacts for 6X8Z CSU: Contacts of Structural Units for 6X8Z Structure Factors (687 Kb) Retrieve 6X8Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6X8Z from S2C, [Save to disk]

View 6X8Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6X8Z

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6x8z_A] [6x8z_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6X8Z

Community annotation for 6X8Z at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---