6XAF Hydrolase date Jun 04, 2020
title 1.9a Crystal Structure Of The Gtpase Domain Of Parkinson'S D Associated Protein Lrrk2 Carrying R1398h
authors Q.Q.Hoang, J.Liao, X.Huang, Y.Park, C.X.Wu
compound source
Molecule: Leucine-Rich Repeat Serinethreonine-Protein Kina
Chain: A, B
Fragment: Gtpase Domain (Unp Residues 1329-1520)
Synonym: Dardarin
Ec: 2.7.11.1,3.6.5.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lrrk2, Park8
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petduet1
symmetry Space Group: P 1 21 1
R_factor 0.180 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.497 101.785 44.527 90.00 101.38 90.00
method X-Ray Diffractionresolution 1.97 Å
ligand GDP, MG enzyme Transferase E.C.2.7.11.1 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (6xaf.pdb1.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 6XAF
  • CSU: Contacts of Structural Units for 6XAF
  • Structure Factors (665 Kb)
  • Retrieve 6XAF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6XAF from S2C, [Save to disk]
  • View 6XAF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6XAF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6xaf_A] [6xaf_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6XAF
  • Community annotation for 6XAF at PDBWiki (http://pdbwiki.org)

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