6XBH Hydrolase Hydrolase Inhibitor date Jun 06, 2020
title Crystal Structure Of The Sars-Cov-2 (Covid-19) Main Protease Complex With Inhibitor Uaw247
authors M.Sacco, C.Ma, J.Wang, Y.Chen
compound source
Molecule: 3c-Like Proteinase
Chain: A
Fragment: Unp Residues 3264-3569
Synonym: 3cl-Pro,3clp,Main Protease,Mpro,Non-Structural Pro Nsp5,Sars Coronavirus Main Proteinase;
Ec: 3.4.22.69
Engineered: Yes
Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: Rep, 1a-1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Inhibitor Uaw247
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 1 2 1
R_factor 0.174 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.190 54.512 45.129 90.00 100.02 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand ELL, GOL, NA, P6S enzyme Hydrolase E.C.3.4.22.69 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and inhibition of the SARS-CoV-2 main protease reveals strategy for developing dual inhibitors against M(pro) and cathepsin L., Sacco MD, Ma C, Lagarias P, Gao A, Townsend JA, Meng X, Dube P, Zhang X, Hu Y, Kitamura N, Hurst B, Tarbet B, Marty MT, Kolocouris A, Xiang Y, Chen Y, Wang J, Sci Adv. 2020 Nov 6. pii: sciadv.abe0751. doi: 10.1126/sciadv.abe0751. PMID:33158912
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (6xbh.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 6XBH
  • CSU: Contacts of Structural Units for 6XBH
  • Structure Factors (832 Kb)
  • Retrieve 6XBH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6XBH from S2C, [Save to disk]
  • View 6XBH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6XBH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6xbh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6xbh_C] [6xbh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6XBH
  • Community annotation for 6XBH at PDBWiki (http://pdbwiki.org)

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