6XC3 Immune System Viral Protein date Jun 08, 2020
title Crystal Structure Of Sars-Cov-2 Receptor Binding Domain In C With Antibodies Cc12.1 And Cr3022
authors M.Yuan, H.Liu, N.C.Wu, X.Zhu, I.A.Wilson
compound source
Molecule: Cr3022 Heavy Chain
Chain: H
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Cr3022 Light Chain
Chain: L
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Cc12.1 Light Chain
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Mus Musculus
Expression_system_taxid: 10090

Molecule: Cc12.1 Heavy Chain
Chain: B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Mus Musculus
Expression_system_taxid: 10090

Molecule: Spike Protein S1
Chain: C
Engineered: Yes
Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: S, 2
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 41 21 2
R_factor 0.177 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.772 109.772 235.680 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand NAG enzyme
Primary referenceStructural basis of a shared antibody response to SARS-CoV-2., Yuan M, Liu H, Wu NC, Lee CD, Zhu X, Zhao F, Huang D, Yu W, Hua Y, Tien H, Rogers TF, Landais E, Sok D, Jardine JG, Burton DR, Wilson IA, Science. 2020 Aug 28;369(6507):1119-1123. doi: 10.1126/science.abd2321. Epub 2020, Jul 13. PMID:32661058
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (173 Kb) [Save to disk]
  • Biological Unit Coordinates (6xc3.pdb1.gz) 168 Kb
  • LPC: Ligand-Protein Contacts for 6XC3
  • CSU: Contacts of Structural Units for 6XC3
  • Structure Factors (1069 Kb)
  • Retrieve 6XC3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6XC3 from S2C, [Save to disk]
    • View 6XC3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6XC3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6xc3_C] [6xc3_B] [6xc3_A] [6xc3_H] [6xc3_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6XC3
  • Community annotation for 6XC3 at PDBWiki (http://pdbwiki.org)

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