6XEB Hydrolase Hydrolase Inhibitor date Jun 12, 2020
title Structure Of Human Hdac2 In Complex With Ketone Inhibitor (C
authors D.J.Klein, D.Clausen
compound source
Molecule: Histone Deacetylase 2
Chain: A, B, C
Synonym: Hd2
Ec: 3.5.1.98
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hdac2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 21
R_factor 0.172 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.390 99.030 139.580 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand CA, PEG, SO4, V1P, ZN enzyme Hydrolase E.C.3.5.1.98 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (213 Kb) [Save to disk]
  • Biological Unit Coordinates (6xeb.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (6xeb.pdb2.gz) 73 Kb
  • Biological Unit Coordinates (6xeb.pdb3.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 6XEB
  • CSU: Contacts of Structural Units for 6XEB
  • Structure Factors (6922 Kb)
  • Retrieve 6XEB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6XEB from S2C, [Save to disk]
    • View 6XEB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6XEB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6xeb_C] [6xeb_A] [6xeb_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6XEB
  • Community annotation for 6XEB at PDBWiki (http://pdbwiki.org)

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