6XR4 Signaling Protein, Transferase date Jul 10, 2020
title Integrative In Situ Structure Of Parkinsons Disease-Linked H
authors E.Villa, K.Lasker, M.Audagnotto
compound source
Molecule: Leucine-Rich Repeat Serinethreonine-Protein Kina
Chain: A, B
Synonym: Dardarin
Ec: 2.7.11.1,3.6.5.-
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hek293
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 14.00 Å
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • protein serine/threonine pho...
  • GTPase activator activity
  • protein binding
  • protein phosphorylation
  • excitatory postsynaptic pote...

  • Primary referenceThe In Situ Structure of Parkinson's Disease-Linked LRRK2., Watanabe R, Buschauer R, Bohning J, Audagnotto M, Lasker K, Lu TW, Boassa D, Taylor S, Villa E, Cell. 2020 Aug 7. pii: S0092-8674(20)30995-8. doi: 10.1016/j.cell.2020.08.004. PMID:32783917
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2629 Kb) [Save to disk]
  • Biological Unit Coordinates (6xr4.pdb1.gz) 41 Kb
  • CSU: Contacts of Structural Units for 6XR4
  • Retrieve 6XR4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6XR4 from S2C, [Save to disk]
  • View 6XR4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6XR4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6xr4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6xr4_A] [6xr4_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6XR4
  • Community annotation for 6XR4 at PDBWiki (http://pdbwiki.org)

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