6XWH	Transcription	date	Jan 23, 2020
title	Crystal Structure Of The Human Rxr Dna-Binding Domain Homodi To The Human Hoxb13 Dr0 Response Element
authors	A.G.Mcewen, P.Poussin-Courmontagne, C.Peluso-Iltis, N.Rochel
compound		source
Molecule: Hoxb13 Dr0 Response Element, 5'-3' Strand Chain: A Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Hoxb13 Dr0 Response Element, 3'-5' Strand Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Retinoic Acid Receptor Rxr-Alpha Chain: C, D Synonym: Nuclear Receptor Subfamily 2 Group B Member 1,Reti Receptor Alpha; Engineered: Yes Other_details: Dna-Binding Domain		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rxra, Nr2b1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
symmetry	Space Group: P 1 21 1	R_factor 0.185 R_Free 0.224
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.705 62.522 53.635 90.00 104.84 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	ZN	enzyme
Primary reference	Structural basis for DNA recognition and allosteric control of the retinoic acid receptors RAR-RXR., Osz J, McEwen AG, Bourguet M, Przybilla F, Peluso-Iltis C, Poussin-Courmontagne P, Mely Y, Cianferani S, Jeffries CM, Svergun DI, Rochel N, Nucleic Acids Res. 2020 Sep 25;48(17):9969-9985. doi: 10.1093/nar/gkaa697. PMID:32974652

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk] Biological Unit Coordinates (6xwh.pdb1.gz) 82 Kb LPC: Ligand-Protein Contacts for 6XWH CSU: Contacts of Structural Units for 6XWH Structure Factors (901 Kb) Retrieve 6XWH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6XWH from S2C, [Save to disk]

View 6XWH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6XWH

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6xwh_C] [6xwh_A] [6xwh_B] [6xwh_D] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6XWH

Community annotation for 6XWH at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---