6XXD CryoEM structure of the type IV pilin PilA4 from Thermus thermophilus date
authors Neuhaus, A., Gold, V.A.M.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.22
Gene
Ontology
ChainFunctionProcessComponent
F, N, K, E, M, C, L, A, J, O, P, B, H, D, I, G


Primary referenceCryo-electron microscopy reveals two distinct type IV pili assembled by the same bacterium., Neuhaus A, Selvaraj M, Salzer R, Langer JD, Kruse K, Kirchner L, Sanders K, Daum B, Averhoff B, Gold VAM, Nat Commun. 2020 May 6;11(1):2231. doi: 10.1038/s41467-020-15650-w. PMID:32376942
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (295 Kb) [Save to disk]
  • Biological Unit Coordinates (6xxd.pdb1.gz) 293 Kb
  • CSU: Contacts of Structural Units for 6XXD
  • Retrieve 6XXD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6XXD from S2C, [Save to disk]
  • View 6XXD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6XXD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6xxd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6xxd_K] [6xxd_M] [6xxd_F] [6xxd_J] [6xxd_H] [6xxd_P] [6xxd_A] [6xxd_D] [6xxd_E] [6xxd_G] [6xxd_N] [6xxd_L] [6xxd_O] [6xxd_C] [6xxd_B] [6xxd_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6XXD
  • Community annotation for 6XXD at PDBWiki (http://pdbwiki.org)

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