6Y1J Peptide Binding Protein date Feb 12, 2020
title 14-3-3 Sigma In Complex With Ikappabalpha Ps63 Peptide
authors M.Wolter, C.Ottmann
compound source
Molecule: 14-3-3 Protein Sigma
Chain: A
Synonym: Epithelial Cell Marker Protein 1,Stratifin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sfn, Hme1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nf-Kappa-B Inhibitor Alpha
Chain: P
Synonym: I-Kappa-B-Alpha,Ikappabalpha,Major Histocompatibil Complex Enhancer-Binding Protein Mad3;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 2 2 21
R_factor 0.170 R_Free 0.183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.460 111.820 62.480 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.13 Å
ligand CA, CL, CSO, GOL, MG, SEP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein kinase C inhibitor a...
  • positive regulation of prote...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (6y1j.pdb1.gz) 177 Kb
  • LPC: Ligand-Protein Contacts for 6Y1J
  • CSU: Contacts of Structural Units for 6Y1J
  • Structure Factors (4757 Kb)
  • Retrieve 6Y1J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Y1J from S2C, [Save to disk]
  • View 6Y1J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6Y1J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6y1j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6y1j_A] [6y1j_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6Y1J
  • Community annotation for 6Y1J at PDBWiki (http://pdbwiki.org)

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