6Y22 Ligase date Feb 14, 2020
title Ring-Dtc Domains Of Deltex 2, Form 1
authors M.Gabrielssen, L.Buetow, D.T.Huang
compound source
Molecule: Probable E3 Ubiquitin-Protein Ligase Dtx2
Chain: A
Synonym: Protein Deltex-2,Hdtx2,Ring Finger Protein 58,Ring Ubiquitin Transferase Dtx2;
Ec: 2.3.2.27
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dtx2, Kiaa1528, Rnf58
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.179 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.418 106.418 74.669 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.07 Å
ligand ZN enzyme Transferase E.C.2.3.2.27 BRENDA
Primary referenceDELTEX2 C-terminal domain recognizes and recruits ADP-ribosylated proteins for ubiquitination., Ahmed SF, Buetow L, Gabrielsen M, Lilla S, Chatrin C, Sibbet GJ, Zanivan S, Huang DT, Sci Adv. 2020 Aug 21;6(34). pii: 6/34/eabc0629. doi: 10.1126/sciadv.abc0629., Print 2020 Aug. PMID:32937373
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (6y22.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 6Y22
  • CSU: Contacts of Structural Units for 6Y22
  • Structure Factors (1248 Kb)
  • Retrieve 6Y22 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Y22 from S2C, [Save to disk]
  • View 6Y22 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6Y22
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6y22_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6Y22
  • Community annotation for 6Y22 at PDBWiki (http://pdbwiki.org)

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