6Y2D Rna Binding Protein date Feb 15, 2020
title Crystal Structure Of The Second Kh Domain Of Fubp1
authors X.Ni, A.Chaikuad, A.C.Joerger, C.H.Arrowsmith, A.M.Edwards, C.Bou S.Knapp, Structural Genomics Consortium (Sgc)
compound source
Molecule: Far Upstream Element-Binding Protein 1
Chain: A, B, C, D
Synonym: Fuse-Binding Protein 1,Dna Helicase V,Hdh V
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fubp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.195 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.888 82.181 49.371 90.00 91.04 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand GOL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceComparative structural analyses and nucleotide-binding characterization of the four KH domains of FUBP1., Ni X, Knapp S, Chaikuad A, Sci Rep. 2020 Aug 10;10(1):13459. doi: 10.1038/s41598-020-69832-z. PMID:32778776
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (6y2d.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (6y2d.pdb2.gz) 23 Kb
  • Biological Unit Coordinates (6y2d.pdb3.gz) 23 Kb
  • Biological Unit Coordinates (6y2d.pdb4.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 6Y2D
  • CSU: Contacts of Structural Units for 6Y2D
  • Structure Factors (755 Kb)
  • Retrieve 6Y2D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Y2D from S2C, [Save to disk]
  • View 6Y2D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6Y2D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6y2d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6y2d_B] [6y2d_C] [6y2d_D] [6y2d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6Y2D
  • Community annotation for 6Y2D at PDBWiki (http://pdbwiki.org)

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